Q. Meng, I. Ochoa, M. Hernaez. GPress: a framework for querying General Feature Format (GFF) files and expression files in a compressed form, Bioinformatics, 2020.
J. Voges, T. Paridaens, F. Müntefering, L. S.Mainzer, B. Bliss, M. Yang, I. Ochoa, J. Fostier, J. Ostermann, and M. Hernaez. GABAC: an arithmetic coding solution for genomic data, Bioinformatics, 2019.
O. Gevaert,..., M. Hernaez,..., N. Pochet. Imaging-AMARETTO: a radiogenomics software tool for interpreting multi-omics networks for relevance to radiographic and histopathology imaging- derived biomarkers of clinical outcomes with application to studies of brain tumors, JCO Clinical Cancer Informatics, 2020.
M. Hernaez , C. Blatti, O. Gevaert. Comparison of single gene and module-based methods for modeling gene regulatory networks, Bioinformatics, 2019.
H. Zheng, K. Brennan, M. Hernaez, O. Gevaert. Benchmark of lncRNA Quantification for RNA-Seq of Cancer Samples, GigaScience, 2019.
"Uncovering biomarkers via machine learning methods to improve diagnosis, prevention and treatment of diseases in the context of personalize medicine”,
Dr. Mikel Hernáez, Program Director.